Signal peptide
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A signal peptide is a short (15-60 amino acids long) peptide chain that directs the post translational transport of a protein. Some signal peptides are cleaved from the protein by signal peptidase after the proteins are transported. Signal peptides may also be called targeting signals or signal sequences. The amino acid sequences of signal peptides direct proteins which are synthesized in the cytosol to certain organelles such as the nucleus, mitochondrial matrix, endoplasmic reticulum, chloroplast, and peroxisome.
A nuclear localization signal (NLS) is a signal peptide directing to the nucleus and is often a unit consisting of plus-charged amino acids. The NLS normally is located inside the peptide chain. Almost all proteins that are transported to the endoplasmic reticulum have a sequence consisting of 5-10 hydrophobic amino acids on the N-terminus. Most of these proteins are transported from the endoplasmic reticulum to the Golgi apparatus. If these proteins have a particular 4-amino-acids sequence on the C-terminus, these proteins stay in the endoplasmic reticulam. The signal peptide that directs to the mitochondrial matrix has another sequence consisting of an alternate pattern which a few hydrophobic amino acids and a few plus-charged amino acids form. There are two types of signal peptides directing to peroxisome, which are called peroxisomal targeting signals (PTS). One is PTS1, which is made of three amino acids on the C-terminus. The other is PTS2, which is made of a 26-36-amino-acid sequence on the N-terminus.
Types
Following is a list of types of signal peptides:
- N-terminus signal peptides often target the mitochondrial matrix, endoplasmic reticulum and peroxisome.
- C-terminus signal peptides often target the peroxisome.
Typical signal peptides
Transport to the nucleus (NLS) -Pro-Pro-Lys-Lys-Lys-Arg-Lys-Val-
Transport to the endoplasmic reticulum H2N-Met-Met-Ser-Phe-Val-Ser-Leu- Leu-Leu-Val-Gly-Ile-Leu-Phe- Trp-Ala-Thr-Glu-Ala-Glu-Gln- Leu-Thr-Lys-Cys-Glu-Val-Phe- Gln-
Retention to the endoplasmic reticulum -Lys-Asp-Gln-Leu-COOH
Transport to the mitochondrial matrix H2N-Met-Leu-Ser-Leu-Arg-Gln-Ser- Ile-Arg-Phe-Phe-Lys-Pro-Ala- Thr-Arg-Thr-Leu-Cys-Ser-Ser- Arg-Tyr-Leu-Leu-
Transport to the peroxisome (PTS1) -Ser-Lys-Leu-COOH
Transport to the peroxisome (PTS2) H2N-----Arg-Leu-X5-His-Leu-
H2N is the N-terminus of a protein. COOH is the C-Terminus of a protein.